The Quest for Thylacoleo

Thylacoleo Imagery : GENOMICS RESOURCES

Thylacoleo's "genomics resource" with links to the numerous databases & software packages available on the web.

Cell Biology On-Line

University of Manitoba's Plant Genetics Dept. :- http://www.umanitoba.ca/faculties/afs/plant_science/courses/39_314/

Data Searching

Ensembl : Human Genome
Genbank : Nucleotide Sequences
InterProScan : Protein Domains
KEGG : Metabolic pathways
NR : Protein Sequences
OMIM : Genetic Diseases
PDB : Protein Structures
PubMed : Lit. Search/Refs
Swiss-Prot : Protein Sequences

RNA/DNA Sequence Analysis

Assembly : Assemble DNA Sequences
BLAST/TBLAST : Database search
Genome Browser : Whole Genome Browse
GenomeScan : Gene Discovery
Mfold : RNA Structure
PCR : PCR Primers
Webcutter : Restriction Mapping
http://www.ncbi.nlm.nih.gov/gorf/gorf.html : The ORF Finder

Protein Sequence Analysis

BLAST : Homology Search
ClustalW : Multi-Sequence Alignment
Cn3D : 3D Strucures
Entrez : Database Search
ExPASy : Protein Analysis
Dotlet : Dot Plots - rep. elements.
InterProScan : Protein Domains
JalView : Multi-Alignment Editor
Phylip : Phylogeny
PSIPRED : 2° Structure Prediction
SRS : Database Search
T-Coffee : Multiple Alignments

Protocols & Resources

http://www.bioscience.org/
http://www.bioprotocol.com/ : Protocols
http://www.biotech-resource.com/: General Resources
Vector Screen
G+C Content : gene regulation<
Genomatix : DNA word frequencies
Pasteur Institute : biological software
Molecular Toolkit : Analysis/manipulation of DNA/protein sequences(No Go with Zone Alarm!)

DATABASE LINKS

Genomics & Database Links

http://www.gcg.com/
http://www.public.iastate.edu/~pedro/ : Pedro's Bio Links page
http://www.ncbi.nlm.nih.gov/ : NCBI Home Page
http://www.ncbi.nlm.nih.gov/Genbank/GenbankSearch.html :
http://www.ncbi.nlm.nih.gov/Entrez/ : Entrez search & Retrieval system
http://www.ncbi.nlm.nih.gov/entrez/query/static/help/helpdoc.html : Entrez's Help Page
http://www.ncbi.nlm.nih.gov/Ftp/index.html : NCBI's FTP site
ftp://ncbi.nlm.nih.gov/blast/executables/ : Directory of NCBI's BLAST executables
http://www.ornl.gov/TechResources/Human_Genome/links.html#informatics : ORNL Genetics Links
http://www.ornl.gov/TechResources/Human_Genome/genetics.html : ORNL Library
http://alces.med.umn.edu/VGC.html : Virtual Genome Centre
http://www.pasteur.fr/recherche/BNB/bnb-en.html : the BioNet Book
http://www.bis.med.jhmi.edu/Dan/software/biol-links.html : Archives for Biological software & Databases
http://www.promega.com/biolink/ : Biolink Resources
http://fugu.hgmp.mrc.ac.uk/ : the FUGU Project
http://genomics.senescence.info/ : Human Ageing Genomic Resources

Phylogeny & Population Modelling Software

http://gnome.agrenv.mcgill.ca/dm/software.htm : Genetics Software
http://mendel.uab.es/biocomputacio/tutorial/sessio6/felsenstein/software.html : Phylogeny Programmes
http://www.ucmp.berkeley.edu/subway/phylo/phylosoft.html : Phylogenetics Software Resources
http://lgb.unige.ch/arlequin/ : the Home of Arlequin
http://dino.wiz.uni-kassel.de/model_db/mdb/populus.html : POPULUS
http://cc.oulu.fi/~jaspi/popgen/popgen.htm : POPGEN
http://evolution.genetics.washington.edu/phylip.html : PHYLIP
http://www.bioinformatik.de/ : Bioinformatik Deutschland

Model Organisms

http://zfish.uoregon.edu/ : the Zebrafish Server
http://www.wormbook.org/ : the Worm Book (C. elegans)
http://genome-www.stanford.edu/Saccharomyces/ : Yeast Database
http://www.cshl.org/ : Cold Spring Harbour Laboratory

Protein Visualisation

http://www.umass.edu/microbio/rasmol/ : Rasmol's Home Page
http://www.umass.edu/microbio/chime/explorer/ : The Protein Explorer
http://www.umass.edu/microbio/rasmol/pdblite.htm : PDB Lite

Technologies

DNA Micro arrays .. http://www.pasteur.fr/cgi-bin/biology/bnb_s.pl?english=1&query=microarray
Micro array Newsgroup : http://www.eGroups.com/group/microarray/info.html
Catalogue & links : http://www.bioinformatik.de/cgi-bin/browse/Catalog/Microarray_Technology/
Arty's Biotechnology Resources : http://www.ahpcc.unm.edu/~aroberts/

And also :-
http://barinth.tripod.com/chips.html
http://industry.ebi.ac.uk/~alan/MicroArray/
http://www.biologie.ens.fr/en/genetiqu/puces/links.html
http://www.epa.gov/nheerl/epamac/links.htm
http://linkage.rockefeller.edu/wli/microarray/

Electrophoresis
http://www.nas.net/~dbc/cic_hamilton/phor.html : Electrophoresis Resources
http://www.rit.edu/~pac8612/electro/E_Sim.html : Electrophoresis Simulation

Life Extension

Human Ageing Genomic Resources : http://genomics.senescence.info/
Cynthia Kenyon
Methuselah Mouse : http://www.mprize.org/
SENS : http://www.sens.org/ (Aubrey de Grey)

Maths Resources

http://www.mathtools.net : Math tools & technical computing portal

The Thylacine Redemption© : cloning the Thylacine?

http://www.austmus.gov.au/thylacine/ : The Thylacine Cloning Project. Now kaput.

Journals & Publishers